IL_9E6Q_053

3D structure

PDB id

9E6Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Pyrobaculum calidifontis 50S ribosomal subunit in complex with Dri

Experimental method

ELECTRON MICROSCOPY

Resolution

1.95 Å

Loop

Sequence

GCAAC*GGC

Length

8 nucleotides

Bulged bases

9E6Q|1|1|G|1461

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9E6Q_053 not in the Motif Atlas

Homologous match to IL_4V9F_051

Geometric discrepancy: 0.1915

The information below is about IL_4V9F_051

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_63596.11

Basepair signature

cWW-cWS-cSH-tWH-cWW-L

Number of instances in this motif group

19

Unit IDs

9E6Q|1|1|G|1448
9E6Q|1|1|C|1449
9E6Q|1|1|A|1450
9E6Q|1|1|A|1451
9E6Q|1|1|C|1452
*
9E6Q|1|1|G|1460
9E6Q|1|1|G|1461
9E6Q|1|1|C|1462

Current chains

Chain 1

23S rRNA

Nearby chains

Chain AQ

Large ribosomal subunit protein eL19

Chain AT

Large ribosomal subunit protein uL22

Chain Af

Large ribosomal subunit protein eL39