IL_9E6Q_054

3D structure

PDB id

9E6Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Pyrobaculum calidifontis 50S ribosomal subunit in complex with Dri

Experimental method

ELECTRON MICROSCOPY

Resolution

1.95 Å

Loop

Sequence

CUAAG*CGAAAG

Length

11 nucleotides

Bulged bases

9E6Q|1|1|A|1509, 9E6Q|1|1|A|1510

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_08938.1

Basepair signature

cWW-tWH-L-tHS-cWW

Number of instances in this motif group

22

Unit IDs

9E6Q|1|1|C|1479
9E6Q|1|1|U|1480
9E6Q|1|1|A|1481
9E6Q|1|1|A|1482
9E6Q|1|1|G|1483
*
9E6Q|1|1|C|1506
9E6Q|1|1|G|1507
9E6Q|1|1|A|1508
9E6Q|1|1|A|1509
9E6Q|1|1|A|1510
9E6Q|1|1|G|1511

Current chains

Chain 1

23S rRNA

Nearby chains

Chain AA

Large ribosomal subunit protein uL2

Chain Ac

Large ribosomal subunit protein eL34

Chain Ad

Large ribosomal subunit protein eL37

Chain Af

Large ribosomal subunit protein eL39