IL_9E6Q_058

3D structure

PDB id

9E6Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Pyrobaculum calidifontis 50S ribosomal subunit in complex with Dri

Experimental method

ELECTRON MICROSCOPY

Resolution

1.95 Å

Loop

Sequence

UUAAC*GGAAUA

Length

11 nucleotides

Bulged bases

9E6Q|1|1|U|1669

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_25943.1

Basepair signature

cWW-tWH-tHH-tHS-cWW

Number of instances in this motif group

5

Unit IDs

9E6Q|1|1|U|1613
9E6Q|1|1|U|1614
9E6Q|1|1|A|1615
9E6Q|1|1|A|1616
9E6Q|1|1|C|1617
*
9E6Q|1|1|G|1665
9E6Q|1|1|G|1666
9E6Q|1|1|A|1667
9E6Q|1|1|A|1668
9E6Q|1|1|U|1669
9E6Q|1|1|A|1670

Current chains

Chain 1

23S rRNA

Nearby chains

Chain Ac

Large ribosomal subunit protein eL34

Chain Ae

LSU ribosomal protein L38E

Chain Ak

PaREP1 domain containing protein