IL_9E6Q_063

3D structure

PDB id

9E6Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Pyrobaculum calidifontis 50S ribosomal subunit in complex with Dri

Experimental method

ELECTRON MICROSCOPY

Resolution

1.95 Å

Loop

Sequence

GGAA*U(OMC)

Length

6 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: OMC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9E6Q_063 not in the Motif Atlas

Geometric match to IL_5J7L_306

Geometric discrepancy: 0.056

The information below is about IL_5J7L_306

Detailed Annotation

Major groove platform; stack outside cWW

Broad Annotation

Major groove platform

Motif group

IL_50694.7

Basepair signature

cWW-tSH-cWW-L

Number of instances in this motif group

27

Unit IDs

9E6Q|1|1|G|1810
9E6Q|1|1|G|1811
9E6Q|1|1|A|1812
9E6Q|1|1|A|1813
*
9E6Q|1|1|U|2114
9E6Q|1|1|OMC|2115

Current chains

Chain 1

23S rRNA

Nearby chains

Chain AB

Large ribosomal subunit protein uL3

Chain AI

Large ribosomal subunit protein uL14