IL_9E6Q_068

3D structure

PDB id

9E6Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Pyrobaculum calidifontis 50S ribosomal subunit in complex with Dri

Experimental method

ELECTRON MICROSCOPY

Resolution

1.95 Å

Loop

Sequence

CGCGAG*UGUGUAC(OMG)

Length

14 nucleotides

Bulged bases

9E6Q|1|1|G|1937, 9E6Q|1|1|U|1952, 9E6Q|1|1|C|1956

QA status

Modified nucleotides: OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9E6Q|1|1|C|1934
9E6Q|1|1|G|1935
9E6Q|1|1|C|1936
9E6Q|1|1|G|1937
9E6Q|1|1|A|1938
9E6Q|1|1|G|1939
*
9E6Q|1|1|U|1950
9E6Q|1|1|G|1951
9E6Q|1|1|U|1952
9E6Q|1|1|G|1953
9E6Q|1|1|U|1954
9E6Q|1|1|A|1955
9E6Q|1|1|C|1956
9E6Q|1|1|OMG|1957

Current chains

Chain 1

23S rRNA

Nearby chains

Chain AA

Large ribosomal subunit protein uL2

Chain Ai

Large ribosomal subunit protein eL43