IL_9E6Q_073

3D structure

PDB id

9E6Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Pyrobaculum calidifontis 50S ribosomal subunit in complex with Dri

Experimental method

ELECTRON MICROSCOPY

Resolution

1.95 Å

Loop

Sequence

GC*GCA(OMU)

Length

6 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: OMU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9E6Q_073 not in the Motif Atlas

Geometric match to IL_5TBW_089

Geometric discrepancy: 0.1199

The information below is about IL_5TBW_089

Detailed Annotation

Bulged stacked bases

Broad Annotation

Bulged stacked bases

Motif group

IL_22551.1

Basepair signature

cWW-L-cWW-L

Number of instances in this motif group

9

Unit IDs

9E6Q|1|1|G|2054
9E6Q|1|1|C|2055
*
9E6Q|1|1|G|2085
9E6Q|1|1|C|2086
9E6Q|1|1|A|2087
9E6Q|1|1|OMU|2088

Current chains

Chain 1

23S rRNA

Nearby chains

Chain 3

Putative signal-transduction protein with CBS domains