IL_9E6Q_074
3D structure
- PDB id
- 9E6Q (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the Pyrobaculum calidifontis 50S ribosomal subunit in complex with Dri
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 1.95 Å
Loop
- Sequence
- C(5MC)AA(A2M)UGCCUU(OMG)*CGUG
- Length
- 16 nucleotides
- Bulged bases
- 9E6Q|1|1|A2M|2059, 9E6Q|1|1|U|2065, 9E6Q|1|1|U|2084
- QA status
- Modified nucleotides: 5MC, A2M, OMG
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_84014.1
- Basepair signature
- cWW-L-R-cHW-cWW-L-L-tSW-L
- Number of instances in this motif group
- 8
Unit IDs
9E6Q|1|1|C|2055
9E6Q|1|1|5MC|2056
9E6Q|1|1|A|2057
9E6Q|1|1|A|2058
9E6Q|1|1|A2M|2059
9E6Q|1|1|U|2060
9E6Q|1|1|G|2061
9E6Q|1|1|C|2062
9E6Q|1|1|C|2063
9E6Q|1|1|U|2064
9E6Q|1|1|U|2065
9E6Q|1|1|OMG|2066
*
9E6Q|1|1|C|2082
9E6Q|1|1|G|2083
9E6Q|1|1|U|2084
9E6Q|1|1|G|2085
Current chains
- Chain 1
- 23S rRNA
Nearby chains
- Chain 3
- Putative signal-transduction protein with CBS domains
Coloring options: