IL_9E6Q_076

3D structure

PDB id

9E6Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Pyrobaculum calidifontis 50S ribosomal subunit in complex with Dri

Experimental method

ELECTRON MICROSCOPY

Resolution

1.95 Å

Loop

Sequence

GC(OMG)*CUAC

Length

7 nucleotides

Bulged bases

9E6Q|1|1|C|2175, 9E6Q|1|1|U|2727, 9E6Q|1|1|A|2728

QA status

Modified nucleotides: OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_80025.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

8

Unit IDs

9E6Q|1|1|G|2174
9E6Q|1|1|C|2175
9E6Q|1|1|OMG|2176
*
9E6Q|1|1|C|2726
9E6Q|1|1|U|2727
9E6Q|1|1|A|2728
9E6Q|1|1|C|2729

Current chains

Chain 1

23S rRNA

Nearby chains

Chain AB

Large ribosomal subunit protein uL3

Chain AT

Large ribosomal subunit protein uL22