IL_9E6Q_080

3D structure

PDB id

9E6Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Pyrobaculum calidifontis 50S ribosomal subunit in complex with Dri

Experimental method

ELECTRON MICROSCOPY

Resolution

1.95 Å

Loop

Sequence

GG*CAC

Length

5 nucleotides

Bulged bases

9E6Q|1|1|A|2369

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9E6Q_080 not in the Motif Atlas

Homologous match to IL_4V9F_079

Geometric discrepancy: 0.12

The information below is about IL_4V9F_079

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_31462.7

Basepair signature

cWW-L-cWW

Number of instances in this motif group

132

Unit IDs

9E6Q|1|1|G|2357
9E6Q|1|1|G|2358
*
9E6Q|1|1|C|2368
9E6Q|1|1|A|2369
9E6Q|1|1|C|2370

Current chains

Chain 1

23S rRNA

Nearby chains

Chain 3

Putative signal-transduction protein with CBS domains

Chain AN

Large ribosomal subunit protein uL16

Chain AS

Large ribosomal subunit protein eL21

Chain Ah

eL42