IL_9E6Q_085

3D structure

PDB id

9E6Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Pyrobaculum calidifontis 50S ribosomal subunit in complex with Dri

Experimental method

ELECTRON MICROSCOPY

Resolution

1.95 Å

Loop

Sequence

(PSU)CG*(PSU)(OMG)

Length

5 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: PSU, OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9E6Q_085 not in the Motif Atlas

Homologous match to IL_4V9F_083

Geometric discrepancy: 0.1074

The information below is about IL_4V9F_083

Detailed Annotation

Major groove platform

Broad Annotation

No text annotation

Motif group

IL_07039.3

Basepair signature

cWW-L-cWW

Number of instances in this motif group

16

Unit IDs

9E6Q|1|1|PSU|2571
9E6Q|1|1|C|2572
9E6Q|1|1|G|2573
*
9E6Q|1|1|PSU|2607
9E6Q|1|1|OMG|2608

Current chains

Chain 1

23S rRNA

Nearby chains

Chain 3

Putative signal-transduction protein with CBS domains

Chain AN

Large ribosomal subunit protein uL16