IL_9E6Q_087
3D structure
- PDB id
- 9E6Q (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the Pyrobaculum calidifontis 50S ribosomal subunit in complex with Dri
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 1.95 Å
Loop
- Sequence
- GUGAG*CGACC
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9E6Q_087 not in the Motif Atlas
- Homologous match to IL_4V9F_085
- Geometric discrepancy: 0.338
- The information below is about IL_4V9F_085
- Detailed Annotation
- Double sheared with non-canonical cWW
- Broad Annotation
- Double sheared
- Motif group
- IL_17948.2
- Basepair signature
- cWW-L-R-tSH-tHS-cWW
- Number of instances in this motif group
- 13
Unit IDs
9E6Q|1|1|G|2580
9E6Q|1|1|U|2581
9E6Q|1|1|G|2582
9E6Q|1|1|A|2583
9E6Q|1|1|G|2584
*
9E6Q|1|1|C|2594
9E6Q|1|1|G|2595
9E6Q|1|1|A|2596
9E6Q|1|1|C|2597
9E6Q|1|1|C|2598
Current chains
- Chain 1
- 23S rRNA
Nearby chains
- Chain 3
- Putative signal-transduction protein with CBS domains
- Chain AN
- Large ribosomal subunit protein uL16
- Chain Ag
- Large ribosomal subunit protein eL40
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