IL_9E6Q_089

3D structure

PDB id

9E6Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Pyrobaculum calidifontis 50S ribosomal subunit in complex with Dri

Experimental method

ELECTRON MICROSCOPY

Resolution

1.95 Å

Loop

Sequence

(OMC)(PSU)C*GUG(A2M)G

Length

8 nucleotides

Bulged bases

9E6Q|1|1|G|2690, 9E6Q|1|1|A2M|2691

QA status

Modified nucleotides: OMC, PSU, A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9E6Q_089 not in the Motif Atlas

Homologous match to IL_4V9F_087

Geometric discrepancy: 0.1936

The information below is about IL_4V9F_087

Detailed Annotation

Isolated non-canonical cWW with bulges

Broad Annotation

Isolated non-canonical cWW with bulges

Motif group

IL_07785.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

33

Unit IDs

9E6Q|1|1|OMC|2624
9E6Q|1|1|PSU|2625
9E6Q|1|1|C|2626
*
9E6Q|1|1|G|2688
9E6Q|1|1|U|2689
9E6Q|1|1|G|2690
9E6Q|1|1|A2M|2691
9E6Q|1|1|G|2692

Current chains

Chain 1

23S rRNA

Nearby chains

Chain 3

Putative signal-transduction protein with CBS domains

Chain AB

Large ribosomal subunit protein uL3

Chain AI

Large ribosomal subunit protein uL14