IL_9E6Q_092

3D structure

PDB id

9E6Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Pyrobaculum calidifontis 50S ribosomal subunit in complex with Dri

Experimental method

ELECTRON MICROSCOPY

Resolution

1.95 Å

Loop

Sequence

CG*CAG

Length

5 nucleotides

Bulged bases

9E6Q|1|1|A|2716

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9E6Q_092 not in the Motif Atlas

Geometric match to IL_2VPL_002

Geometric discrepancy: 0.3273

The information below is about IL_2VPL_002

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_31462.7

Basepair signature

cWW-L-cWW

Number of instances in this motif group

132

Unit IDs

9E6Q|1|1|C|2705
9E6Q|1|1|G|2706
*
9E6Q|1|1|C|2715
9E6Q|1|1|A|2716
9E6Q|1|1|G|2717

Current chains

Chain 1

23S rRNA

Nearby chains

Chain 3

Putative signal-transduction protein with CBS domains

Chain AA

Large ribosomal subunit protein uL2