IL_9E6Q_094

3D structure

PDB id

9E6Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Pyrobaculum calidifontis 50S ribosomal subunit in complex with Dri

Experimental method

ELECTRON MICROSCOPY

Resolution

1.95 Å

Loop

Sequence

UCAGUAC*GGAACG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_02666.1

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

17

Unit IDs

9E6Q|1|1|U|2767
9E6Q|1|1|C|2768
9E6Q|1|1|A|2769
9E6Q|1|1|G|2770
9E6Q|1|1|U|2771
9E6Q|1|1|A|2772
9E6Q|1|1|C|2773
*
9E6Q|1|1|G|2778
9E6Q|1|1|G|2779
9E6Q|1|1|A|2780
9E6Q|1|1|A|2781
9E6Q|1|1|C|2782
9E6Q|1|1|G|2783

Current chains

Chain 1

23S rRNA

Nearby chains

Chain AE

Large ribosomal subunit protein uL6

Chain AI

Large ribosomal subunit protein uL14

Chain Ag

Large ribosomal subunit protein eL40