IL_9E6Q_095

3D structure

PDB id

9E6Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Pyrobaculum calidifontis 50S ribosomal subunit in complex with Dri

Experimental method

ELECTRON MICROSCOPY

Resolution

1.95 Å

Loop

Sequence

CCUCU*ACG

Length

8 nucleotides

Bulged bases

9E6Q|1|1|C|2839

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9E6Q_095 not in the Motif Atlas

Homologous match to IL_4V9F_093

Geometric discrepancy: 0.1641

The information below is about IL_4V9F_093

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_63596.11

Basepair signature

cWW-cWS-cSH-tWH-cWW-L

Number of instances in this motif group

19

Unit IDs

9E6Q|1|1|C|2795
9E6Q|1|1|C|2796
9E6Q|1|1|U|2797
9E6Q|1|1|C|2798
9E6Q|1|1|U|2799
*
9E6Q|1|1|A|2838
9E6Q|1|1|C|2839
9E6Q|1|1|G|2840

Current chains

Chain 1

23S rRNA

Nearby chains

Chain AB

Large ribosomal subunit protein uL3

Chain AI

Large ribosomal subunit protein uL14

Chain AW

Large ribosomal subunit protein eL24