IL_9E6Q_097

3D structure

PDB id

9E6Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Pyrobaculum calidifontis 50S ribosomal subunit in complex with Dri

Experimental method

ELECTRON MICROSCOPY

Resolution

1.95 Å

Loop

Sequence

UGUAC*GGCAG

Length

10 nucleotides

Bulged bases

9E6Q|1|1|U|2804

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_45790.2

Basepair signature

cWW-tSH-L-tHS-cWW

Number of instances in this motif group

12

Unit IDs

9E6Q|1|1|U|2802
9E6Q|1|1|G|2803
9E6Q|1|1|U|2804
9E6Q|1|1|A|2805
9E6Q|1|1|C|2806
*
9E6Q|1|1|G|2831
9E6Q|1|1|G|2832
9E6Q|1|1|C|2833
9E6Q|1|1|A|2834
9E6Q|1|1|G|2835

Current chains

Chain 1

23S rRNA

Nearby chains

Chain AB

Large ribosomal subunit protein uL3

Chain AW

Large ribosomal subunit protein eL24

Chain Aa

Large ribosomal subunit protein eL31