IL_9E6Q_099

3D structure

PDB id

9E6Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Pyrobaculum calidifontis 50S ribosomal subunit in complex with Dri

Experimental method

ELECTRON MICROSCOPY

Resolution

1.95 Å

Loop

Sequence

GA(OMU)AAC*GGAAGC

Length

12 nucleotides

Bulged bases

9E6Q|1|1|A|2877

QA status

Modified nucleotides: OMU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_91079.1

Basepair signature

cWW-cWW-tWH-L-tHS-cWW

Number of instances in this motif group

8

Unit IDs

9E6Q|1|1|G|2849
9E6Q|1|1|A|2850
9E6Q|1|1|OMU|2851
9E6Q|1|1|A|2852
9E6Q|1|1|A|2853
9E6Q|1|1|C|2854
*
9E6Q|1|1|G|2874
9E6Q|1|1|G|2875
9E6Q|1|1|A|2876
9E6Q|1|1|A|2877
9E6Q|1|1|G|2878
9E6Q|1|1|C|2879

Current chains

Chain 1

23S rRNA

Nearby chains

Chain AE

Large ribosomal subunit protein uL6

Chain AG

Large ribosomal subunit protein uL13

Chain Ag

Large ribosomal subunit protein eL40