IL_9E6Q_111

3D structure

PDB id

9E6Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Pyrobaculum calidifontis 50S ribosomal subunit in complex with Dri

Experimental method

ELECTRON MICROSCOPY

Resolution

1.95 Å

Loop

Sequence

CUC*GG

Length

5 nucleotides

Bulged bases

9E6Q|1|2|U|91

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9E6Q_111 not in the Motif Atlas

Homologous match to IL_4V9F_107

Geometric discrepancy: 0.1

The information below is about IL_4V9F_107

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_89505.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

117

Unit IDs

9E6Q|1|2|C|90
9E6Q|1|2|U|91
9E6Q|1|2|C|92
*
9E6Q|1|2|G|99
9E6Q|1|2|G|100

Current chains

Chain 2

5S rRNA

Nearby chains

Chain 1

Large subunit ribosomal RNA; LSU rRNA

Chain AN

Large ribosomal subunit protein uL16

Chain AR

Large ribosomal subunit protein eL20

Chain AY

Large ribosomal subunit protein uL30