IL_9E7G_001

3D structure

PDB id

9E7G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of HIV-1 RRE SLII G34C mutant in complex with Fab BL3-6

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GC*GAC

Length

5 nucleotides

Bulged bases

9E7G|1|R|A|31

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9E7G_001 not in the Motif Atlas

Geometric match to IL_2VPL_002

Geometric discrepancy: 0.3614

The information below is about IL_2VPL_002

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_14190.3

Basepair signature

cWW-L-cWW

Number of instances in this motif group

175

Unit IDs

9E7G|1|R|G|13
9E7G|1|R|C|14
*
9E7G|1|R|G|30
9E7G|1|R|A|31
9E7G|1|R|C|32

Current chains

Chain R

Rev Response Element SLII

Nearby chains