IL_9E9Q_002

3D structure

PDB id

9E9Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

SARS-CoV-2 SL5 crystal structure native

Experimental method

X-RAY DIFFRACTION

Resolution

3.33 Å

Loop

Sequence

GCAG*CGAUCAUC

Length

12 nucleotides

Bulged bases

9E9Q|1|A|U|49, 9E9Q|1|A|A|51

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_74852.1

Basepair signature

cWW-L-R-L-R-L-cWW-L

Number of instances in this motif group

4

Unit IDs

9E9Q|1|A|G|15
9E9Q|1|A|C|16
9E9Q|1|A|A|17
9E9Q|1|A|G|18
*
9E9Q|1|A|C|46
9E9Q|1|A|G|47
9E9Q|1|A|A|48
9E9Q|1|A|U|49
9E9Q|1|A|C|50
9E9Q|1|A|A|51
9E9Q|1|A|U|52
9E9Q|1|A|C|53

Current chains

Chain A

RNA (101-MER)

Nearby chains