IL_9EBB_040

3D structure

PDB id

9EBB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the MPY and ribosome-tunnel occluding hibernation factors bound to the Mycobacterium tuberculosis C- 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

GAU*AGC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9EBB_040 not in the Motif Atlas

Homologous match to IL_7A0S_030

Geometric discrepancy: 0.2692

The information below is about IL_7A0S_030

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_84227.1

Basepair signature

cWW-cWS-cWW

Number of instances in this motif group

20

Unit IDs

9EBB|1|I|G|1000
9EBB|1|I|A|1001
9EBB|1|I|U|1002
*
9EBB|1|I|A|1034
9EBB|1|I|G|1035
9EBB|1|I|C|1036

Current chains

Chain I

23S ribosomal RNA

Nearby chains

Chain M

50S ribosomal protein L16

Chain V

50S ribosomal protein L25