IL_9EBB_045

3D structure

PDB id

9EBB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the MPY and ribosome-tunnel occluding hibernation factors bound to the Mycobacterium tuberculosis C- 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CCCCCAAG*CG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9EBB_045 not in the Motif Atlas

Homologous match to IL_8B0X_098

Geometric discrepancy: 0.1831

The information below is about IL_8B0X_098

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_46868.2

Basepair signature

cWW-L-cWW-L-L-R-L-R

Number of instances in this motif group

5

Unit IDs

9EBB|1|I|C|1133
9EBB|1|I|C|1134
9EBB|1|I|C|1135
9EBB|1|I|C|1136
9EBB|1|I|C|1137
9EBB|1|I|A|1138
9EBB|1|I|A|1139
9EBB|1|I|G|1140
*
9EBB|1|I|C|1280
9EBB|1|I|G|1281

Current chains

Chain I

23S ribosomal RNA

Nearby chains

Chain J

50S ribosomal protein L13

Chain Q

50S ribosomal protein L20