IL_9EBB_067

3D structure

PDB id

9EBB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the MPY and ribosome-tunnel occluding hibernation factors bound to the Mycobacterium tuberculosis C- 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

GGAA*UCUGC

Length

9 nucleotides

Bulged bases

9EBB|1|I|U|1796

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9EBB_067 not in the Motif Atlas

Geometric match to IL_6DLR_005

Geometric discrepancy: 0.346

The information below is about IL_6DLR_005

Detailed Annotation

tWW and near cWH

Broad Annotation

tWW and near cWH

Motif group

IL_45860.1

Basepair signature

cWW-L-R-L-R-cWW

Number of instances in this motif group

2

Unit IDs

9EBB|1|I|G|1670
9EBB|1|I|G|1671
9EBB|1|I|A|1672
9EBB|1|I|A|1673
*
9EBB|1|I|U|1794
9EBB|1|I|C|1795
9EBB|1|I|U|1796
9EBB|1|I|G|1797
9EBB|1|I|C|1798

Current chains

Chain I

23S ribosomal RNA

Nearby chains