IL_9EBB_098

3D structure

PDB id

9EBB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the MPY and ribosome-tunnel occluding hibernation factors bound to the Mycobacterium tuberculosis C- 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

UCG*UA

Length

5 nucleotides

Bulged bases

9EBB|1|I|C|2440

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9EBB_098 not in the Motif Atlas

Homologous match to IL_8B0X_146

Geometric discrepancy: 0.4635

The information below is about IL_8B0X_146

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_97561.7

Basepair signature

cWW-L-cWW

Number of instances in this motif group

173

Unit IDs

9EBB|1|I|U|2439
9EBB|1|I|C|2440
9EBB|1|I|G|2441
*
9EBB|1|I|U|2458
9EBB|1|I|A|2459

Current chains

Chain I

23S ribosomal RNA

Nearby chains

Chain C

50S ribosomal protein L2

Chain y

Large ribosomal subunit protein bL28