IL_9EBB_130

3D structure

PDB id

9EBB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the MPY and ribosome-tunnel occluding hibernation factors bound to the Mycobacterium tuberculosis C- 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CUGCC*GAUG

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9EBB_130 not in the Motif Atlas

Homologous match to IL_8B0X_010

Geometric discrepancy: 0.1068

The information below is about IL_8B0X_010

Detailed Annotation

Minor groove platform related

Broad Annotation

Minor groove platform related

Motif group

IL_60988.4

Basepair signature

cWW-cWW-L-R-L-cWW

Number of instances in this motif group

10

Unit IDs

9EBB|1|a|C|128
9EBB|1|a|U|129
9EBB|1|a|G|130
9EBB|1|a|C|131
9EBB|1|a|C|132
*
9EBB|1|a|G|226
9EBB|1|a|A|227
9EBB|1|a|U|228
9EBB|1|a|G|229

Current chains

Chain a

16S ribosomal RNA

Nearby chains

Chain p

30S ribosomal protein S16

Chain q

30S ribosomal protein S17

Chain t

30S ribosomal protein S20