IL_9EBB_143
3D structure
- PDB id
- 9EBB (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the MPY and ribosome-tunnel occluding hibernation factors bound to the Mycobacterium tuberculosis C- 70S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- GUGCCAG*CGGUAAUAC
- Length
- 16 nucleotides
- Bulged bases
- 9EBB|1|a|A|523, 9EBB|1|a|U|525, 9EBB|1|a|A|526
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9EBB_143 not in the Motif Atlas
- Homologous match to IL_8B0X_024
- Geometric discrepancy: 0.4387
- The information below is about IL_8B0X_024
- Detailed Annotation
- Kink-turn related
- Broad Annotation
- No text annotation
- Motif group
- IL_52042.3
- Basepair signature
- cWW-cSW-tWH-L-R-L-R-tHS-cWW
- Number of instances in this motif group
- 6
Unit IDs
9EBB|1|a|G|506
9EBB|1|a|U|507
9EBB|1|a|G|508
9EBB|1|a|C|509
9EBB|1|a|C|510
9EBB|1|a|A|511
9EBB|1|a|G|512
*
9EBB|1|a|C|519
9EBB|1|a|G|520
9EBB|1|a|G|521
9EBB|1|a|U|522
9EBB|1|a|A|523
9EBB|1|a|A|524
9EBB|1|a|U|525
9EBB|1|a|A|526
9EBB|1|a|C|527
Current chains
- Chain a
- 16S ribosomal RNA
Nearby chains
- Chain A
- Ribosome hibernation promoting factor
- Chain c
- 30S ribosomal protein S3
- Chain d
- 30S ribosomal protein S4
- Chain l
- 30S ribosomal protein S12
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