IL_9EBB_159

3D structure

PDB id

9EBB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the MPY and ribosome-tunnel occluding hibernation factors bound to the Mycobacterium tuberculosis C- 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

GG*CAC

Length

5 nucleotides

Bulged bases

9EBB|1|a|A|1219

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9EBB_159 not in the Motif Atlas

Homologous match to IL_8B0X_041

Geometric discrepancy: 0.2814

The information below is about IL_8B0X_041

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_98469.1

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

37

Unit IDs

9EBB|1|a|G|946
9EBB|1|a|G|947
*
9EBB|1|a|C|1218
9EBB|1|a|A|1219
9EBB|1|a|C|1220

Current chains

Chain a

16S ribosomal RNA

Nearby chains

Chain A

Ribosome hibernation promoting factor

Chain m

30S ribosomal protein S13

Chain s

30S ribosomal protein S19