IL_9EBB_177

3D structure

PDB id

9EBB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the MPY and ribosome-tunnel occluding hibernation factors bound to the Mycobacterium tuberculosis C- 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CGGAUC*GUGAAG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9EBB_177 not in the Motif Atlas

Homologous match to IL_8B0X_056

Geometric discrepancy: 0.1052

The information below is about IL_8B0X_056

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_28265.1

Basepair signature

cWW-tSH-tSH-tHS-cWW-cWW

Number of instances in this motif group

7

Unit IDs

9EBB|1|a|C|1295
9EBB|1|a|G|1296
9EBB|1|a|G|1297
9EBB|1|a|A|1298
9EBB|1|a|U|1299
9EBB|1|a|C|1300
*
9EBB|1|a|G|1321
9EBB|1|a|U|1322
9EBB|1|a|G|1323
9EBB|1|a|A|1324
9EBB|1|a|A|1325
9EBB|1|a|G|1326

Current chains

Chain a

16S ribosomal RNA

Nearby chains

Chain m

30S ribosomal protein S13