IL_9EC3_006
3D structure
- PDB id
- 9EC3 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the ribosome-tunnel occluding hibernation factor bound to the Mycobacterium tuberculosis C- 70S ribosome carrying fMet-tRNA(fMet) and deacylated tRNA at ribosome P and E sites.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.29 Å
Loop
- Sequence
- CGAUGAUAC*GAAAAGUAG
- Length
- 18 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9EC3_006 not in the Motif Atlas
- Homologous match to IL_8B0X_175
- Geometric discrepancy: 0.1128
- The information below is about IL_8B0X_175
- Detailed Annotation
- Bacterial 5S Loop E
- Broad Annotation
- Loop E
- Motif group
- IL_71138.1
- Basepair signature
- cWW-tSH-tHW-L-R-L-R-L-R-tWH-tHS-cWW
- Number of instances in this motif group
- 3
Unit IDs
9EC3|1|B|C|70
9EC3|1|B|G|71
9EC3|1|B|A|72
9EC3|1|B|U|73
9EC3|1|B|G|74
9EC3|1|B|A|75
9EC3|1|B|U|76
9EC3|1|B|A|77
9EC3|1|B|C|78
*
9EC3|1|B|G|93
9EC3|1|B|A|94
9EC3|1|B|A|95
9EC3|1|B|A|96
9EC3|1|B|A|97
9EC3|1|B|G|98
9EC3|1|B|U|99
9EC3|1|B|A|100
9EC3|1|B|G|101
Current chains
- Chain B
- 5S ribosomal RNA
Nearby chains
- Chain I
- Large subunit ribosomal RNA; LSU rRNA
- Chain M
- 50S ribosomal protein L16
- Chain V
- 50S ribosomal protein L25
- Chain Z
- 50S ribosomal protein L30
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