IL_9EC3_043

3D structure

PDB id

9EC3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the ribosome-tunnel occluding hibernation factor bound to the Mycobacterium tuberculosis C- 70S ribosome carrying fMet-tRNA(fMet) and deacylated tRNA at ribosome P and E sites.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.29 Å

Loop

Sequence

CUAAGUG*CUCAAG

Length

13 nucleotides

Bulged bases

9EC3|1|I|C|1271, 9EC3|1|I|A|1273

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9EC3_043 not in the Motif Atlas

Homologous match to IL_8B0X_100

Geometric discrepancy: 0.1059

The information below is about IL_8B0X_100

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_57188.6

Basepair signature

cWW-tWW-L-tWW-cWW-cSH

Number of instances in this motif group

6

Unit IDs

9EC3|1|I|C|1147
9EC3|1|I|U|1148
9EC3|1|I|A|1149
9EC3|1|I|A|1150
9EC3|1|I|G|1151
9EC3|1|I|U|1152
9EC3|1|I|G|1153
*
9EC3|1|I|C|1269
9EC3|1|I|U|1270
9EC3|1|I|C|1271
9EC3|1|I|A|1272
9EC3|1|I|A|1273
9EC3|1|I|G|1274

Current chains

Chain I

23S ribosomal RNA

Nearby chains

Chain 4

50S ribosomal protein L36

Chain G

50S ribosomal protein L6

Chain J

50S ribosomal protein L13