IL_9EC3_049

3D structure

PDB id

9EC3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the ribosome-tunnel occluding hibernation factor bound to the Mycobacterium tuberculosis C- 70S ribosome carrying fMet-tRNA(fMet) and deacylated tRNA at ribosome P and E sites.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.29 Å

Loop

Sequence

AUGAGUAG*CGAAAUU

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9EC3_049 not in the Motif Atlas

Homologous match to IL_7A0S_045

Geometric discrepancy: 0.1277

The information below is about IL_7A0S_045

Detailed Annotation

8x7 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_62167.5

Basepair signature

cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

16

Unit IDs

9EC3|1|I|A|1393
9EC3|1|I|U|1394
9EC3|1|I|G|1395
9EC3|1|I|A|1396
9EC3|1|I|G|1397
9EC3|1|I|U|1398
9EC3|1|I|A|1399
9EC3|1|I|G|1400
*
9EC3|1|I|C|2249
9EC3|1|I|G|2250
9EC3|1|I|A|2251
9EC3|1|I|A|2252
9EC3|1|I|A|2253
9EC3|1|I|U|2254
9EC3|1|I|U|2255

Current chains

Chain I

23S ribosomal RNA

Nearby chains

Chain 0

50S ribosomal protein L32

Chain 1

DUF5302 domain-containing protein

Chain E

50S ribosomal protein L4

Chain S

50S ribosomal protein L22