IL_9EC3_076

3D structure

PDB id

9EC3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the ribosome-tunnel occluding hibernation factor bound to the Mycobacterium tuberculosis C- 70S ribosome carrying fMet-tRNA(fMet) and deacylated tRNA at ribosome P and E sites.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.29 Å

Loop

Sequence

UGCGAAG*CGAUGUAUA

Length

16 nucleotides

Bulged bases

9EC3|1|I|G|2035, 9EC3|1|I|U|2050, 9EC3|1|I|U|2054

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9EC3_076 not in the Motif Atlas

Homologous match to IL_8B0X_132

Geometric discrepancy: 0.2228

The information below is about IL_8B0X_132

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_17069.6

Basepair signature

cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW

Number of instances in this motif group

5

Unit IDs

9EC3|1|I|U|2032
9EC3|1|I|G|2033
9EC3|1|I|C|2034
9EC3|1|I|G|2035
9EC3|1|I|A|2036
9EC3|1|I|A|2037
9EC3|1|I|G|2038
*
9EC3|1|I|C|2047
9EC3|1|I|G|2048
9EC3|1|I|A|2049
9EC3|1|I|U|2050
9EC3|1|I|G|2051
9EC3|1|I|U|2052
9EC3|1|I|A|2053
9EC3|1|I|U|2054
9EC3|1|I|A|2055

Current chains

Chain I

23S ribosomal RNA

Nearby chains

Chain C

50S ribosomal protein L2

Chain a

Small subunit ribosomal RNA; SSU rRNA