IL_9EC3_105

3D structure

PDB id

9EC3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the ribosome-tunnel occluding hibernation factor bound to the Mycobacterium tuberculosis C- 70S ribosome carrying fMet-tRNA(fMet) and deacylated tRNA at ribosome P and E sites.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.29 Å

Loop

Sequence

UUGAG*CAAGAUCAG

Length

14 nucleotides

Bulged bases

9EC3|1|I|C|3018

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9EC3_105 not in the Motif Atlas

Homologous match to IL_7A0S_093

Geometric discrepancy: 0.1682

The information below is about IL_7A0S_093

Detailed Annotation

tSH-tHS-tHW

Broad Annotation

tSH-tHS-tHW

Motif group

IL_04638.4

Basepair signature

cWW-tSH-tHW-tHS-L-cWW-L-L

Number of instances in this motif group

6

Unit IDs

9EC3|1|I|U|2874
9EC3|1|I|U|2875
9EC3|1|I|G|2876
9EC3|1|I|A|2877
9EC3|1|I|G|2878
*
9EC3|1|I|C|3012
9EC3|1|I|A|3013
9EC3|1|I|A|3014
9EC3|1|I|G|3015
9EC3|1|I|A|3016
9EC3|1|I|U|3017
9EC3|1|I|C|3018
9EC3|1|I|A|3019
9EC3|1|I|G|3020

Current chains

Chain I

23S ribosomal RNA

Nearby chains

Chain D

50S ribosomal protein L3

Chain J

50S ribosomal protein L13