IL_9EC3_136
3D structure
- PDB id
- 9EC3 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the ribosome-tunnel occluding hibernation factor bound to the Mycobacterium tuberculosis C- 70S ribosome carrying fMet-tRNA(fMet) and deacylated tRNA at ribosome P and E sites.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.29 Å
Loop
- Sequence
- GUGCCAG*CGGUAAUAC
- Length
- 16 nucleotides
- Bulged bases
- 9EC3|1|a|U|522, 9EC3|1|a|A|523, 9EC3|1|a|U|525, 9EC3|1|a|A|526
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9EC3_136 not in the Motif Atlas
- Homologous match to IL_8B0X_024
- Geometric discrepancy: 0.4014
- The information below is about IL_8B0X_024
- Detailed Annotation
- Kink-turn related
- Broad Annotation
- No text annotation
- Motif group
- IL_52042.3
- Basepair signature
- cWW-cSW-tWH-L-R-L-R-tHS-cWW
- Number of instances in this motif group
- 6
Unit IDs
9EC3|1|a|G|506
9EC3|1|a|U|507
9EC3|1|a|G|508
9EC3|1|a|C|509
9EC3|1|a|C|510
9EC3|1|a|A|511
9EC3|1|a|G|512
*
9EC3|1|a|C|519
9EC3|1|a|G|520
9EC3|1|a|G|521
9EC3|1|a|U|522
9EC3|1|a|A|523
9EC3|1|a|A|524
9EC3|1|a|U|525
9EC3|1|a|A|526
9EC3|1|a|C|527
Current chains
- Chain a
- 16S ribosomal RNA
Nearby chains
- Chain c
- 30S ribosomal protein S3
- Chain l
- 30S ribosomal protein S12
Coloring options: