IL_9EC3_157

3D structure

PDB id

9EC3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the ribosome-tunnel occluding hibernation factor bound to the Mycobacterium tuberculosis C- 70S ribosome carrying fMet-tRNA(fMet) and deacylated tRNA at ribosome P and E sites.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.29 Å

Loop

Sequence

UCU*AUA

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9EC3_157 not in the Motif Atlas

Geometric match to IL_8GLP_276

Geometric discrepancy: 0.1354

The information below is about IL_8GLP_276

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.6

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

241

Unit IDs

9EC3|1|a|U|1003
9EC3|1|a|C|1004
9EC3|1|a|U|1005
*
9EC3|1|a|A|1010
9EC3|1|a|U|1011
9EC3|1|a|A|1012

Current chains

Chain a

16S ribosomal RNA

Nearby chains

Chain 9

Small ribosomal subunit protein uS14

Chain s

30S ribosomal protein S19