IL_9EC3_165

3D structure

PDB id

9EC3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the ribosome-tunnel occluding hibernation factor bound to the Mycobacterium tuberculosis C- 70S ribosome carrying fMet-tRNA(fMet) and deacylated tRNA at ribosome P and E sites.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.29 Å

Loop

Sequence

CUGC*GAGGAAG

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9EC3_165 not in the Motif Atlas

Geometric match to IL_8B0X_052

Geometric discrepancy: 0.2151

The information below is about IL_8B0X_052

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_32376.2

Basepair signature

cWW-cSH-cWW-tWH-L-cWW-L-L

Number of instances in this motif group

3

Unit IDs

9EC3|1|a|C|1150
9EC3|1|a|U|1151
9EC3|1|a|G|1152
9EC3|1|a|C|1153
*
9EC3|1|a|G|1167
9EC3|1|a|A|1168
9EC3|1|a|G|1169
9EC3|1|a|G|1170
9EC3|1|a|A|1171
9EC3|1|a|A|1172
9EC3|1|a|G|1173

Current chains

Chain a

16S ribosomal RNA

Nearby chains

Chain i

30S ribosomal protein S9