IL_9ED0_004

3D structure

PDB id

9ED0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human LARP1 bound to the 40S small ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

GAUUAAG*CGC

Length

10 nucleotides

Bulged bases

9ED0|1|2|A|46

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9ED0_004 not in the Motif Atlas

Geometric match to IL_8P9A_376

Geometric discrepancy: 0.0814

The information below is about IL_8P9A_376

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_88082.2

Basepair signature

cWW-L-tSS-L-cWW-L

Number of instances in this motif group

3

Unit IDs

9ED0|1|2|G|41
9ED0|1|2|A|42
9ED0|1|2|U|43
9ED0|1|2|U|44
9ED0|1|2|A|45
9ED0|1|2|A|46
9ED0|1|2|G|47
*
9ED0|1|2|C|479
9ED0|1|2|G|480
9ED0|1|2|C|481

Current chains

Chain 2

rRNA

Nearby chains

Chain X

40S ribosomal protein S23