IL_9ED0_006
3D structure
- PDB id
- 9ED0 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Human LARP1 bound to the 40S small ribosomal subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- UCUAAG*CUG
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9ED0_006 not in the Motif Atlas
- Geometric match to IL_8P9A_378
- Geometric discrepancy: 0.105
- The information below is about IL_8P9A_378
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_61299.6
- Basepair signature
- cWW-L-R-L-cWW-L-L
- Number of instances in this motif group
- 4
Unit IDs
9ED0|1|2|U|57
9ED0|1|2|C|58
9ED0|1|2|U|59
9ED0|1|2|A|60
9ED0|1|2|A|61
9ED0|1|2|G|62
*
9ED0|1|2|C|86
9ED0|1|2|U|87
9ED0|1|2|G|88
Current chains
- Chain 2
- rRNA
Nearby chains
- Chain E
- Small ribosomal subunit protein eS4, X isoform
- Chain G
- Small ribosomal subunit protein eS6
- Chain Y
- 40S ribosomal protein S24
Coloring options: