IL_9ED0_011

3D structure

PDB id

9ED0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human LARP1 bound to the 40S small ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

(OMU)CC(PSU)U(OMU)*AUUCG

Length

11 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: OMU, PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9ED0_011 not in the Motif Atlas

Geometric match to IL_8CRE_399

Geometric discrepancy: 0.1469

The information below is about IL_8CRE_399

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_31545.1

Basepair signature

cWW-L-R-L-cWW-cWW-cWW

Number of instances in this motif group

4

Unit IDs

9ED0|1|2|OMU|116
9ED0|1|2|C|117
9ED0|1|2|C|118
9ED0|1|2|PSU|119
9ED0|1|2|U|120
9ED0|1|2|OMU|121
*
9ED0|1|2|A|343
9ED0|1|2|U|344
9ED0|1|2|U|345
9ED0|1|2|C|346
9ED0|1|2|G|347

Current chains

Chain 2

rRNA

Nearby chains

Chain E

Small ribosomal subunit protein eS4, X isoform

Chain I

Small ribosomal subunit protein eS8