IL_9ED0_013

3D structure

PDB id

9ED0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human LARP1 bound to the 40S small ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

UGU*AG(A2M)

Length

6 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9ED0_013 not in the Motif Atlas

Geometric match to IL_3CZW_001

Geometric discrepancy: 0.0904

The information below is about IL_3CZW_001

Detailed Annotation

Isolated cWH basepair

Broad Annotation

No text annotation

Motif group

IL_10892.2

Basepair signature

cWW-cHW-cWW

Number of instances in this motif group

58

Unit IDs

9ED0|1|2|U|152
9ED0|1|2|G|153
9ED0|1|2|U|154
*
9ED0|1|2|A|164
9ED0|1|2|G|165
9ED0|1|2|A2M|166

Current chains

Chain 2

rRNA

Nearby chains

Chain G

Small ribosomal subunit protein eS6

Chain Y

40S ribosomal protein S24