IL_9ED0_020

3D structure

PDB id

9ED0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human LARP1 bound to the 40S small ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

GGG*CGAU(OMU)C

Length

9 nucleotides

Bulged bases

9ED0|1|2|OMU|428

QA status

Modified nucleotides: OMU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9ED0_020 not in the Motif Atlas

Geometric match to IL_8CRE_410

Geometric discrepancy: 0.056

The information below is about IL_8CRE_410

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_93336.1

Basepair signature

cWW-tHS-cWW

Number of instances in this motif group

4

Unit IDs

9ED0|1|2|G|411
9ED0|1|2|G|412
9ED0|1|2|G|413
*
9ED0|1|2|C|424
9ED0|1|2|G|425
9ED0|1|2|A|426
9ED0|1|2|U|427
9ED0|1|2|OMU|428
9ED0|1|2|C|429

Current chains

Chain 2

rRNA

Nearby chains

Chain E

Small ribosomal subunit protein eS4, X isoform

Chain J

Small ribosomal subunit protein uS4

Chain X

40S ribosomal protein S23