IL_9ED0_023

3D structure

PDB id

9ED0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human LARP1 bound to the 40S small ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

UUA*U(A2M)

Length

5 nucleotides

Bulged bases

9ED0|1|2|U|488

QA status

Modified nucleotides: A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9ED0_023 not in the Motif Atlas

Geometric match to IL_8P9A_396

Geometric discrepancy: 0.1048

The information below is about IL_8P9A_396

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_97561.3

Basepair signature

cWW-L-cWW

Number of instances in this motif group

147

Unit IDs

9ED0|1|2|U|487
9ED0|1|2|U|488
9ED0|1|2|A|489
*
9ED0|1|2|U|511
9ED0|1|2|A2M|512

Current chains

Chain 2

rRNA

Nearby chains

Chain E

Small ribosomal subunit protein eS4, X isoform

Chain J

Small ribosomal subunit protein uS4

Chain Y

40S ribosomal protein S24