IL_9ED0_031
3D structure
- PDB id
- 9ED0 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Human LARP1 bound to the 40S small ribosomal subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- GUC*GC
- Length
- 5 nucleotides
- Bulged bases
- 9ED0|1|2|U|607
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9ED0_031 not in the Motif Atlas
- Geometric match to IL_3D2V_001
- Geometric discrepancy: 0.1826
- The information below is about IL_3D2V_001
- Detailed Annotation
- Single bulged U
- Broad Annotation
- No text annotation
- Motif group
- IL_97561.3
- Basepair signature
- cWW-L-cWW
- Number of instances in this motif group
- 147
Unit IDs
9ED0|1|2|G|606
9ED0|1|2|U|607
9ED0|1|2|C|608
*
9ED0|1|2|G|635
9ED0|1|2|C|636
Current chains
- Chain 2
- rRNA
Nearby chains
- Chain D
- Small ribosomal subunit protein uS3
- Chain J
- Small ribosomal subunit protein uS4
- Chain e
- Small ribosomal subunit protein eS30
- Chain h
- La-related protein 1
Coloring options: