IL_9ED0_034

3D structure

PDB id

9ED0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human LARP1 bound to the 40S small ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

GUU(A2M)AAA*UC

Length

9 nucleotides

Bulged bases

9ED0|1|2|A2M|668

QA status

Modified nucleotides: A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9ED0_034 not in the Motif Atlas

Geometric match to IL_8CRE_424

Geometric discrepancy: 0.1163

The information below is about IL_8CRE_424

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_20847.1

Basepair signature

cWW-L-cWW-L-L-R

Number of instances in this motif group

5

Unit IDs

9ED0|1|2|G|665
9ED0|1|2|U|666
9ED0|1|2|U|667
9ED0|1|2|A2M|668
9ED0|1|2|A|669
9ED0|1|2|A|670
9ED0|1|2|A|671
*
9ED0|1|2|U|1161
9ED0|1|2|C|1162

Current chains

Chain 2

rRNA

Nearby chains

Chain X

40S ribosomal protein S23

Chain a

Small ribosomal subunit protein eS26