IL_9ED0_037

3D structure

PDB id

9ED0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human LARP1 bound to the 40S small ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

AC*GAA(PSU)

Length

6 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9ED0_037 not in the Motif Atlas

Geometric match to IL_1S03_007

Geometric discrepancy: 0.1267

The information below is about IL_1S03_007

Detailed Annotation

Major groove minor groove platform; mini C-loop

Broad Annotation

No text annotation

Motif group

IL_73108.2

Basepair signature

cWW-cWS-cSH-cWW

Number of instances in this motif group

23

Unit IDs

9ED0|1|2|A|802
9ED0|1|2|C|803
*
9ED0|1|2|G|860
9ED0|1|2|A|861
9ED0|1|2|A|862
9ED0|1|2|PSU|863

Current chains

Chain 2

rRNA

Nearby chains

Chain H

Small ribosomal subunit protein eS7

Chain L

Small ribosomal subunit protein uS17

Chain W

Small ribosomal subunit protein uS8

Chain X

40S ribosomal protein S23