IL_9ED0_039

3D structure

PDB id

9ED0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human LARP1 bound to the 40S small ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

GAAAAAA(PSU)(PSU)*ACCGCAGC

Length

17 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9ED0|1|2|G|807
9ED0|1|2|A|808
9ED0|1|2|A|809||A
9ED0|1|2|A|810||A
9ED0|1|2|A|811||A
9ED0|1|2|A|812
9ED0|1|2|A|813
9ED0|1|2|PSU|814
9ED0|1|2|PSU|815
*
9ED0|1|2|A|849
9ED0|1|2|C|850
9ED0|1|2|C|851
9ED0|1|2|G|852
9ED0|1|2|C|853
9ED0|1|2|A|854
9ED0|1|2|G|855
9ED0|1|2|C|856

Current chains

Chain 2

rRNA

Nearby chains

Chain E

Small ribosomal subunit protein eS4, X isoform

Chain J

Small ribosomal subunit protein uS4

Chain L

Small ribosomal subunit protein uS17

Chain W

Small ribosomal subunit protein uS8