IL_9ED0_044

3D structure

PDB id

9ED0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human LARP1 bound to the 40S small ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

CGGGG*CAAG

Length

9 nucleotides

Bulged bases

9ED0|1|2|G|933

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9ED0_044 not in the Motif Atlas

Geometric match to IL_8CRE_434

Geometric discrepancy: 0.0939

The information below is about IL_8CRE_434

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_15225.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

39

Unit IDs

9ED0|1|2|C|931
9ED0|1|2|G|932
9ED0|1|2|G|933
9ED0|1|2|G|934
9ED0|1|2|G|935
*
9ED0|1|2|C|1007
9ED0|1|2|A|1008
9ED0|1|2|A|1009
9ED0|1|2|G|1010

Current chains

Chain 2

rRNA

Nearby chains

Chain B

Small ribosomal subunit protein eS1

Chain N

Small ribosomal subunit protein uS15

Chain a

Small ribosomal subunit protein eS26