IL_9ED0_052

3D structure

PDB id

9ED0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human LARP1 bound to the 40S small ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

GCG*CC

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9ED0_052 not in the Motif Atlas

Geometric match to IL_8P9A_401

Geometric discrepancy: 0.1255

The information below is about IL_8P9A_401

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_34520.3

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

61

Unit IDs

9ED0|1|2|G|1108
9ED0|1|2|C|1109
9ED0|1|2|G|1110
*
9ED0|1|2|C|1123
9ED0|1|2|C|1124

Current chains

Chain 2

rRNA

Nearby chains

Chain A

Small ribosomal subunit protein uS2

Chain B

Small ribosomal subunit protein eS1

Chain R

Small ribosomal subunit protein eS17

Chain b

Small ribosomal subunit protein eS27