IL_9ED0_056
3D structure
- PDB id
- 9ED0 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Human LARP1 bound to the 40S small ribosomal subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- ACCA*UCCCU
- Length
- 9 nucleotides
- Bulged bases
- 9ED0|1|2|C|1215, 9ED0|1|2|C|1216
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9ED0_056 not in the Motif Atlas
- Geometric match to IL_8CRE_445
- Geometric discrepancy: 0.0904
- The information below is about IL_8CRE_445
- Detailed Annotation
- C-loop
- Broad Annotation
- No text annotation
- Motif group
- IL_63596.12
- Basepair signature
- cWW-cWS-cSH-tWH-cWW-L
- Number of instances in this motif group
- 22
Unit IDs
9ED0|1|2|A|1214
9ED0|1|2|C|1215
9ED0|1|2|C|1216
9ED0|1|2|A|1217
*
9ED0|1|2|U|1681
9ED0|1|2|C|1682
9ED0|1|2|C|1683
9ED0|1|2|C|1684
9ED0|1|2|U|1685
Current chains
- Chain 2
- rRNA
Nearby chains
- Chain F
- Small ribosomal subunit protein uS7
- Chain Q
- Small ribosomal subunit protein uS9
- Chain U
- Small ribosomal subunit protein uS10
- Chain c
- Small ribosomal subunit protein eS28
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