IL_9ED0_058

3D structure

PDB id

9ED0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human LARP1 bound to the 40S small ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

GG*CAC

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9ED0_058 not in the Motif Atlas

Geometric match to IL_8P9A_433

Geometric discrepancy: 0.094

The information below is about IL_8P9A_433

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_34520.3

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

61

Unit IDs

9ED0|1|2|G|1235
9ED0|1|2|G|1236
*
9ED0|1|2|C|1521
9ED0|1|2|A|1522
9ED0|1|2|C|1523

Current chains

Chain 2

rRNA

Nearby chains

Chain P

Small ribosomal subunit protein uS19

Chain S

Small ribosomal subunit protein uS13